Rocky 2022 has ended

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Rocky 2022

Welcome to the Rocky 2022 Conference. Please click on the links below to access the Rocky website and the list of posters:
CONFERENCE RESOURCES
Rocky 2022 Website

POSTER PRESENTATIONS (click on links below for lists)
Poster Presentation List without abstracts
Poster Presentation List with abstracts
Poster Session Information (including session set-up times)

TBA

SLACK CHANNEL - Rocky Communications

8:00am MST

Breakfast Snowmass Conference Center

9:00am MST

Opening Session Snowmass Conference Center

9:15am MST

Keynote 1: PubTator: 10 Years of Growth and Innovation Snowmass Conference Center

10:00am MST

OP 01: Goals, Roles, and Watering holes: A playbook for the leading edge of team science Snowmass Conference Center

10:10am MST

OP 02: Realizing the potential of secure and decentralized harmonization of clinical and genomics data for precision medicine Snowmass Conference Center

10:20am MST

OP 03: iAtlas: an Open-Source, Interactive Portal and Platform for Immuno-Oncology Research Snowmass Conference Center

10:30am MST

OP 04: Tissue-adjusted pathway analysis of cancer Snowmass Conference Center

10:40am MST

Break Snowmass Conference Center

11:00am MST

OP 05: Alignment-free phylogenetic method unveils the pan-mammalian regulatory motif adaptations underlying extended lifespan Snowmass Conference Center

11:10am MST

OP 06: A robust computational framework to benchmark spatiotemporal trajectory association analysis in single-cell spatial transcriptomics Snowmass Conference Center

11:20am MST

OP 07: LochNESS: a novel statistic to quantify sample specific effects in single-cell data based on k-NN graphs Snowmass Conference Center

11:30am MST

OP 08: C3PO: Combined polygenic protein prediction in oncology Snowmass Conference Center

11:40am MST

OP 09: Sex specific genetic architecture of childhood asthma Snowmass Conference Center

11:50am MST

Ski Break Snowmass Mountain

4:00pm MST

Keynote 2: Topic Modeling: Unsupervised Learning and Drivers of the Human Serum Proteome Snowmass Conference Center

4:30pm MST

OP 10: An efficient not-only-linear correlation coefficient based on machine learning Snowmass Conference Center

4:40pm MST

OP 11: Survival-based Gene Set Enrichment Analysis Snowmass Conference Center

4:50pm MST

OP 12: How do you build a data commons? A case study for Down Syndrome Snowmass Conference Center

5:00pm MST

OP 13: Leveraging edge computing for workflow tracking and management to improve academic and healthcare security, efficiency, and auditability Snowmass Conference Center

5:10pm MST

Break Snowmass Conference Center

5:30pm MST

OP 14: Systematic study of human diseases using graph signal processing on gene expression datasets Snowmass Conference Center

5:40pm MST

OP 15: GeneplexusZoo: Utilizing network information across species to improve supervised gene classification Snowmass Conference Center

5:50pm MST

OP 16: Privacy-preserving prediction of phenotypes from genotypes using homomorphic encryption Snowmass Conference Center

6:00pm MST

OP 17: Leveraging public transcriptome data with ML to infer pan-body age- and sex-specific molecular phenomena Snowmass Conference Center

6:30pm MST

Dinner: Il Poggio Restaurant Il Poggio Restaurant 57 Elbert Ln, Snowmass Village

8:00am MST

Breakfast Snowmass Conference Center

9:00am MST

Keynote 3: Changing Word Meanings in Biomedical Literature Reveal Pandemics and New Technologies Snowmass Conference Center

9:45am MST

OP 18: A comprehensive knowledgebase of known and predicted genetic variants associated with COVID-19 severity Snowmass Conference Center

9:55am MST

OP 19: Abyssinian to Zebu: Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO) Snowmass Conference Center

10:05am MST

OP 20: Binding sites prediction of proteins Snowmass Conference Center

10:15am MST

OP 21: On Language Models, Medicine, and Factuality Snowmass Conference Center

10:25am MST

Break Snowmass Conference Center

10:45am MST

OP 22: Metabolites and Markers of Endothelial Dysfunction Help Understand Sepsis Mortality Risk Snowmass Conference Center

10:55am MST

OP 23: A comprehensive analysis of the reusability of public omics data across 2.8 million research publications Snowmass Conference Center

11:05am MST

OP 24: Creating an Ignorance-Base: Exploring known unknowns in the scientific literature Snowmass Conference Center

11:15am MST

OP 25: Identify genes associated with gastrointestinal tract adaptation using Evolink Snowmass Conference Center

11:25am MST

OP 26: Development and validation of an explainable machine learning-based prediction model for drug-food constituent interactions from chemical structures Snowmass Conference Center

11:35am MST

Ski Break Snowmass Mountain

4:00pm MST

Keynote 4: Deep Generative Neural Network for Accurate Drug Response Prediction Snowmass Conference Center

4:30pm MST

OP 27: Metrics and software for assessing microbiota engraftment following Fecal Microbiota Transplant Snowmass Conference Center

4:40pm MST

OP 28: Exploration of 5'UTR Variation in a Clinical Workflow Evaluating Undiagnosed Rare Disease Patients Snowmass Conference Center

4:50pm MST

OP 29: An ML framework for precision medicine: from patient-specific gene networks to translational animal models Snowmass Conference Center

5:00pm MST

OP 30: Identifying alterations associated with aggressiveness in prostate cancer molecular subtypes Snowmass Conference Center

5:10pm MST

Break Snowmass Conference Center

5:30pm MST

OP 31: Rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing Snowmass Conference Center

5:40pm MST

OP 32: How tRNA pools and ramp sequences regulate protein and transcript levels associated with disease Snowmass Conference Center

5:50pm MST

OP 33: Finding Long COVID: Topic modeling of post-infection trends in patient EHR profiles Snowmass Conference Center

6:00pm MST

OP 34: Language representation models based on metadata identify relevant datasets in Gene Expression Omnibus Snowmass Conference Center

6:10pm MST

20-year Celebration Snowmass Conference Center

6:30pm MST

Poster Session Snowmass Conference Center

8:00am MST

Breakfast Snowmass Conference Center

9:00am MST

Keynote 5: The Future of Translational Informatics: Leveraging Knowledge to Enable Causal Explanations at Scale Snowmass Conference Center

9:30am MST

OP 35: Using knowledge graphs to infer gene expression in plants Snowmass Conference Center

9:40am MST

OP 36: Fast, flexible and safe sequence assembly for RNA and beyond Snowmass Conference Center

9:50am MST

OP 37: Visualization and Exploration of Survival Prediction Model Explanations Snowmass Conference Center

10:00am MST

OP 38: Double-strand DNA breaks: Quantitative mapping and computational modeling of mechanisms. Snowmass Conference Center

10:10am MST

Break Snowmass Conference Center

10:30am MST

OP 39: Novel enzyme families among artificial intelligence-based protein structure models Snowmass Conference Center

10:40am MST

OP 40: The Mondo Disease Ontology: A Standardized Disease Terminology of Human and Animal Diseases Snowmass Conference Center

10:50am MST

OP 41: The ability to classify patients based on gene-expression data varies by algorithm and performance metric Snowmass Conference Center

11:00am MST

Keynote 6: Traversing the Mouse-human Interface: An Integrative Bioinformatics Approach to Identify Preclinical Models and Identify Genes and Variants with Shared Roles in Complex Disease Snowmass Conference Center

11:45am MST

Closing Raffle and Best Poster Awards Snowmass Conference Center